GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c15_1090 Pp3c15_1090	Chr15	594848	596287	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c15_1090V3.1 Pp3c15_1090V3.1 PAC:32928647	High	No	1440		Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -33.944 AMFE: -0.665 GC content %: 51.042
Ppatens_Pp3c15_1090V3.2 Pp3c15_1090V3.2 PAC:32928648	High	No	1120		Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -34.170 AMFE: -0.656 GC content %: 52.054

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).