GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c15_14230 Pp3c15_14230	Chr15	9374647	9375935	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c15_14230V3.1 Pp3c15_14230V3.1 PAC:32928550	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -29.051 AMFE: -0.635 GC content %: 45.723
Ppatens_Pp3c15_14230V3.2 Pp3c15_14230V3.2 PAC:32928551	High	No	769		Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -29.701 AMFE: -0.649 GC content %: 45.774
Ppatens_Pp3c15_14230V3.3 Pp3c15_14230V3.3 PAC:32928552	High	No	827		Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -29.226 AMFE: -0.655 GC content %: 44.619
Ppatens_Pp3c15_14230V3.4 Pp3c15_14230V3.4 PAC:32928553	High	No	865		Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -29.526 AMFE: -0.653 GC content %: 45.202
Ppatens_Pp3c15_14230V3.5 Pp3c15_14230V3.5 PAC:32928554	High	No	362		Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -28.343 AMFE: -0.611 GC content %: 46.409

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).