Gene
Ppatens Pp3c15 1740
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c15_1740 Pp3c15_1740 |
Chr15 | 986340 | 990043 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c15_1740V3.1 Pp3c15_1740V3.1 PAC:32926789 |
High | No | 1912 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -27.809 AMFE: -0.671 GC content %: 41.423 | |
| Ppatens_Pp3c15_1740V3.2 Pp3c15_1740V3.2 PAC:32926790 |
High | No | 1995 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -27.850 AMFE: -0.669 GC content %: 41.654 | |
| Ppatens_Pp3c15_1740V3.3 Pp3c15_1740V3.3 PAC:32926791 |
High | No | 1887 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -27.583 AMFE: -0.667 GC content %: 41.335 | |
| Ppatens_Pp3c15_1740V3.4 Pp3c15_1740V3.4 PAC:32926792 |
High | No | 2143 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -27.490 AMFE: -0.666 GC content %: 41.297 | |
| Ppatens_Pp3c15_1740V3.5 Pp3c15_1740V3.5 PAC:32926793 |
High | No | 2146 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -27.647 AMFE: -0.669 GC content %: 41.333 | |
| Ppatens_Pp3c15_1740V3.6 Pp3c15_1740V3.6 PAC:32926795 |
High | No | 2112 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -27.448 AMFE: -0.667 GC content %: 41.146 | |
| Ppatens_Pp3c15_1740V3.7 Pp3c15_1740V3.7 PAC:32926796 |
High | No | 1772 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.155 AMFE: -0.682 GC content %: 41.253 | |
| Ppatens_Pp3c15_1740V3.8 Pp3c15_1740V3.8 PAC:32926797 |
High | No | 1857 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -28.228 AMFE: -0.680 GC content %: 41.519 | |
| Ppatens_Pp3c15_1740V3.9 Pp3c15_1740V3.9 PAC:32926794 |
High | No | 1905 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -27.055 AMFE: -0.658 GC content %: 41.102 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
