GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c15_19130 Pp3c15_19130	Chr15	12638309	12639666	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c15_19130V3.1 Pp3c15_19130V3.1 PAC:32927614	High	No	1292		Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -31.184 AMFE: -0.663 GC content %: 47.059
Ppatens_Pp3c15_19130V3.2 Pp3c15_19130V3.2 PAC:32927615	High	No	1358		Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -30.501 AMFE: -0.668 GC content %: 45.655

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).