GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c15_21540 Pp3c15_21540	Chr15	13958278	13959518	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c15_21540V3.1 Pp3c15_21540V3.1 PAC:32927260	High	No	1230		Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -33.268 AMFE: -0.669 GC content %: 49.756
Ppatens_Pp3c15_21540V3.2 Pp3c15_21540V3.2 PAC:32927261	High	No	1241		Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -32.973 AMFE: -0.665 GC content %: 49.557

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).