Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c15_23158 Pp3c15_23158 |
Chr15 | 14882657 | 14885972 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c15_23158V3.1 Pp3c15_23158V3.1 PAC:32926806 |
High | No | 2805 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -29.340 AMFE: -0.667 GC content %: 43.993 | |
Ppatens_Pp3c15_23158V3.2 Pp3c15_23158V3.2 PAC:32926807 |
High | No | 2837 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -29.774 AMFE: -0.669 GC content %: 44.484 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c15_23158V3.1 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-6_STu | |
Ppatens_Pp3c15_23158V3.2 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-6_STu |