Gene

Ppatens Pp3c15 3240

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ppatens_Pp3c15_3240
Pp3c15_3240
Chr15 1832629 1833814 Phytozome v3.3 Physcomitrella_patens
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ppatens_Pp3c15_3240V3.1
Pp3c15_3240V3.1
PAC:32926602
High No 1186
Coding potential...
Type: noncoding Potential: -1.051
Folding energies...
MFEI: -31.341 AMFE: -0.701
GC content
%: 44.688


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Pp3c15_3240.png