GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c15_4130 Pp3c15_4130	Chr15	2664040	2667079	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c15_4130V3.1 Pp3c15_4130V3.1 PAC:32929318	High	No	1630		Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -30.301 AMFE: -0.656 GC content %: 46.196
Ppatens_Pp3c15_4130V3.2 Pp3c15_4130V3.2 PAC:32929320	High	No	1534		Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -30.495 AMFE: -0.653 GC content %: 46.675
Ppatens_Pp3c15_4130V3.3 Pp3c15_4130V3.3 PAC:32929321	High	No	1690		Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -30.828 AMFE: -0.665 GC content %: 46.391
Ppatens_Pp3c15_4130V3.4 Pp3c15_4130V3.4 PAC:32929317	High	No	330		Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -33.515 AMFE: -0.621 GC content %: 53.939
Ppatens_Pp3c15_4130V3.5 Pp3c15_4130V3.5 PAC:32929319	High	No	2280		Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -30.110 AMFE: -0.669 GC content %: 45.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).