Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c15_6340 Pp3c15_6340 |
Chr15 | 3892859 | 3894972 | Phytozome | v3.3 | Physcomitrella_patens | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c15_6340V3.1 Pp3c15_6340V3.1 PAC:32929343 |
High | No | 933 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -32.733 AMFE: -0.670 GC content %: 48.875 | |
Ppatens_Pp3c15_6340V3.2 Pp3c15_6340V3.2 PAC:32929344 |
High | No | 1285 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -31.704 AMFE: -0.672 GC content %: 47.160 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c15_6340V3.1 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-34_SBi | |
Ppatens_Pp3c15_6340V3.2 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-34_SBi |