GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_10310 Pp3c16_10310	Chr16	6456841	6458166	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_10310V3.1 Pp3c16_10310V3.1 PAC:32983887	High	No	1074		Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -20.261 AMFE: -0.646 GC content %: 31.378
Ppatens_Pp3c16_10310V3.2 Pp3c16_10310V3.2 PAC:32983888	High	No	1071		Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -20.411 AMFE: -0.651 GC content %: 31.373
Ppatens_Pp3c16_10310V3.3 Pp3c16_10310V3.3 PAC:32983889	High	No	1109		Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -20.415 AMFE: -0.649 GC content %: 31.470

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).