GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_11530 Pp3c16_11530	Chr16	7354254	7356129	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_11530V3.1 Pp3c16_11530V3.1 PAC:32985798	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -31.073 AMFE: -0.642 GC content %: 48.367
Ppatens_Pp3c16_11530V3.2 Pp3c16_11530V3.2 PAC:32985799	High	No	1741		Get ORF Coding potential... Type: noncoding Potential: -1.353 Folding energies... MFEI: -32.062 AMFE: -0.688 GC content %: 46.582

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).