Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c16_16170 Pp3c16_16170 |
Chr16 | 10037756 | 10040389 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c16_16170V3.1 Pp3c16_16170V3.1 PAC:32986108 |
Low | No | 1368 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -30.446 AMFE: -0.612 GC content %: 49.781 | |
Ppatens_Pp3c16_16170V3.2 Pp3c16_16170V3.2 PAC:32986109 |
Low | No | 1001 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -29.690 AMFE: -0.592 GC content %: 50.150 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c16_16170V3.1 | SwissProt | 2015-06-01 | P0C224 | 3.0e-5 |
Ppatens_Pp3c16_16170V3.2 | SwissProt | 2015-06-01 | P40909 | 6.0e-6 |