GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_17170 Pp3c16_17170	Chr16	10518754	10519557	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_17170V3.1 Pp3c16_17170V3.1 PAC:32984334	High	No	318		Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -23.742 AMFE: -0.514 GC content %: 46.226
Ppatens_Pp3c16_17170V3.2 Pp3c16_17170V3.2 PAC:32984335	High	No	276		Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -22.391 AMFE: -0.475 GC content %: 47.101

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).