GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_19700 Pp3c16_19700	Chr16	12143322	12144452	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_19700V3.1 Pp3c16_19700V3.1 PAC:32983689	High	No	864		Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -27.951 AMFE: -0.575 GC content %: 48.611
Ppatens_Pp3c16_19700V3.2 Pp3c16_19700V3.2 PAC:32983690	High	No	900		Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -27.600 AMFE: -0.567 GC content %: 48.667

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).