GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_20100 Pp3c16_20100	Chr16	12336760	12338125	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_20100V3.1 Pp3c16_20100V3.1 PAC:32985461	High	No	1116		Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -28.799 AMFE: -0.667 GC content %: 43.190
Ppatens_Pp3c16_20100V3.2 Pp3c16_20100V3.2 PAC:32985460	High	No	847		Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -26.387 AMFE: -0.626 GC content %: 42.149

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).