Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c16_20780 Pp3c16_20780 |
Chr16 | 12772718 | 12774166 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c16_20780V3.1 Pp3c16_20780V3.1 PAC:32984279 |
Low | Yes | 1113 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -33.073 AMFE: -0.700 GC content %: 47.260 | |
Ppatens_Pp3c16_20780V3.2 Pp3c16_20780V3.2 PAC:32984280 |
High | No | 1449 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -31.553 AMFE: -0.697 GC content %: 45.273 |