GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_21780 Pp3c16_21780	Chr16	13494897	13497205	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_21780V3.1 Pp3c16_21780V3.1 PAC:32984408	High	No	987		Get ORF Coding potential... Type: noncoding Potential: -1.416 Folding energies... MFEI: -28.085 AMFE: -0.617 GC content %: 45.491
Ppatens_Pp3c16_21780V3.2 Pp3c16_21780V3.2 PAC:32984409	High	No	1560		Get ORF Coding potential... Type: noncoding Potential: -1.431 Folding energies... MFEI: -27.462 AMFE: -0.624 GC content %: 44.038

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).