GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_23190 Pp3c16_23190	Chr16	14383377	14387200	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_23190V3.1 Pp3c16_23190V3.1 PAC:32983673	High	No	264		Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -29.470 AMFE: -0.603 GC content %: 48.864
Ppatens_Pp3c16_23190V3.2 Pp3c16_23190V3.2 PAC:32983675	High	No	1852		Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -31.112 AMFE: -0.683 GC content %: 45.572
Ppatens_Pp3c16_23190V3.3 Pp3c16_23190V3.3 PAC:32983674	High	No	1746		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -30.481 AMFE: -0.668 GC content %: 45.647

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).