GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_4590 Pp3c16_4590	Chr16	3187122	3190067	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_4590V3.1 Pp3c16_4590V3.1 PAC:32983986	High	No	2764		Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -28.205 AMFE: -0.682 GC content %: 41.353
Ppatens_Pp3c16_4590V3.2 Pp3c16_4590V3.2 PAC:32983987	High	No	1736		Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -29.338 AMFE: -0.669 GC content %: 43.836

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).