GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c16_7420 Pp3c16_7420	Chr16	4597917	4599806	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c16_7420V3.1 Pp3c16_7420V3.1 PAC:32984944	High	No	1070		Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -27.159 AMFE: -0.646 GC content %: 42.056
Ppatens_Pp3c16_7420V3.2 Pp3c16_7420V3.2 PAC:32984943	High	No	936		Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -23.996 AMFE: -0.597 GC content %: 40.171
Ppatens_Pp3c16_7420V3.3 Pp3c16_7420V3.3 PAC:32984942	High	No	808		Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -25.705 AMFE: -0.597 GC content %: 43.069

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).