Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c17_1320 Pp3c17_1320 |
Chr17 | 1023985 | 1025599 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c17_1320V3.1 Pp3c17_1320V3.1 PAC:32907426 |
High | No | 853 | Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -26.377 AMFE: -0.627 GC content %: 42.087 | |
Ppatens_Pp3c17_1320V3.2 Pp3c17_1320V3.2 PAC:32907428 |
High | No | 1121 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -28.573 AMFE: -0.650 GC content %: 43.979 | |
Ppatens_Pp3c17_1320V3.3 Pp3c17_1320V3.3 PAC:32907427 |
High | No | 740 | Get ORF Coding potential... Type: noncoding Potential: -0.602 Folding energies... MFEI: -25.405 AMFE: -0.618 GC content %: 41.081 |