GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c17_7442 Pp3c17_7442	Chr17	5622877	5624554	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c17_7442V3.1 Pp3c17_7442V3.1 PAC:32906013	High	No	714		Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -27.367 AMFE: -0.665 GC content %: 41.176
Ppatens_Pp3c17_7442V3.2 Pp3c17_7442V3.2 PAC:32906014	High	No	807		Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -27.596 AMFE: -0.669 GC content %: 41.264
Ppatens_Pp3c17_7442V3.3 Pp3c17_7442V3.3 PAC:32906015	High	No	859		Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -26.042 AMFE: -0.636 GC content %: 40.978

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).