GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c18_8140 Pp3c18_8140	Chr18	5710713	5711364	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c18_8140V3.1 Pp3c18_8140V3.1 PAC:32981514	High	No	309		Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -34.434 AMFE: -0.619 GC content %: 55.663
Ppatens_Pp3c18_8140V3.2 Pp3c18_8140V3.2 PAC:32981515	High	No	652		Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -31.150 AMFE: -0.627 GC content %: 49.693

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).