GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c19_14690 Pp3c19_14690	Chr19	9758774	9760502	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c19_14690V3.1 Pp3c19_14690V3.1 PAC:32939333	High	No	1429		Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -27.446 AMFE: -0.610 GC content %: 44.997
Ppatens_Pp3c19_14690V3.2 Pp3c19_14690V3.2 PAC:32939335	High	No	225		Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -28.089 AMFE: -0.580 GC content %: 48.444
Ppatens_Pp3c19_14690V3.3 Pp3c19_14690V3.3 PAC:32939334	High	No	749		Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -24.793 AMFE: -0.580 GC content %: 42.724

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).