GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c19_15480 Pp3c19_15480	Chr19	10237600	10238236	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c19_15480V3.1 Pp3c19_15480V3.1 PAC:32938993	High	No	270		Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -23.963 AMFE: -0.558 GC content %: 42.963
Ppatens_Pp3c19_15480V3.2 Pp3c19_15480V3.2 PAC:32938994	High	No	637		Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -24.160 AMFE: -0.566 GC content %: 42.700

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).