GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c19_20810 Pp3c19_20810	Chr19	13801978	13802550	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c19_20810V3.1 Pp3c19_20810V3.1 PAC:32939188	High	No	573		Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -28.918 AMFE: -0.607 GC content %: 47.644
Ppatens_Pp3c19_20810V3.2 Pp3c19_20810V3.2 PAC:32939189	High	No	530		Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -26.151 AMFE: -0.552 GC content %: 47.358

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).