GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c19_2240 Pp3c19_2240	Chr19	1204169	1205760	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c19_2240V3.1 Pp3c19_2240V3.1 PAC:32939788	High	No	1592		Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -23.982 AMFE: -0.589 GC content %: 40.704
Ppatens_Pp3c19_2240V3.2 Pp3c19_2240V3.2 PAC:32939789	High	No	216		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -23.750 AMFE: -0.518 GC content %: 45.833

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).