Gene
Ppatens Pp3c19 22690
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c19_22690 Pp3c19_22690 |
Chr19 | 15236084 | 15238849 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c19_22690V3.1 Pp3c19_22690V3.1 PAC:32939234 |
High | No | 1776 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -29.234 AMFE: -0.645 GC content %: 45.327 | |
| Ppatens_Pp3c19_22690V3.2 Pp3c19_22690V3.2 PAC:32939235 |
High | No | 1784 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -29.563 AMFE: -0.650 GC content %: 45.516 | |
| Ppatens_Pp3c19_22690V3.3 Pp3c19_22690V3.3 PAC:32939236 |
High | No | 1793 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -29.264 AMFE: -0.645 GC content %: 45.343 | |
| Ppatens_Pp3c19_22690V3.4 Pp3c19_22690V3.4 PAC:32939237 |
High | No | 2133 | Get ORF Coding potential... Type: noncoding Potential: -1.388 Folding energies... MFEI: -29.030 AMFE: -0.657 GC content %: 44.210 | |
| Ppatens_Pp3c19_22690V3.5 Pp3c19_22690V3.5 PAC:32939238 |
High | No | 2154 | Get ORF Coding potential... Type: noncoding Potential: -1.389 Folding energies... MFEI: -29.020 AMFE: -0.657 GC content %: 44.197 | |
| Ppatens_Pp3c19_22690V3.6 Pp3c19_22690V3.6 PAC:32939239 |
High | No | 2397 | Get ORF Coding potential... Type: noncoding Potential: -1.391 Folding energies... MFEI: -29.783 AMFE: -0.669 GC content %: 44.514 | |
| Ppatens_Pp3c19_22690V3.7 Pp3c19_22690V3.7 PAC:32939240 |
High | No | 2051 | Get ORF Coding potential... Type: noncoding Potential: -1.387 Folding energies... MFEI: -29.473 AMFE: -0.675 GC content %: 43.637 | |
| Ppatens_Pp3c19_22690V3.8 Pp3c19_22690V3.8 PAC:32939241 |
High | No | 2191 | Get ORF Coding potential... Type: noncoding Potential: -1.376 Folding energies... MFEI: -29.311 AMFE: -0.661 GC content %: 44.318 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
