GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c19_3750 Pp3c19_3750	Chr19	2086141	2087456	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c19_3750V3.1 Pp3c19_3750V3.1 PAC:32939027	High	No	632		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -32.136 AMFE: -0.647 GC content %: 49.684
Ppatens_Pp3c19_3750V3.2 Pp3c19_3750V3.2 PAC:32939028	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -31.644 AMFE: -0.644 GC content %: 49.161

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).