GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c19_6700 Pp3c19_6700	Chr19	3920156	3921009	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c19_6700V3.1 Pp3c19_6700V3.1 PAC:32937824	High	No	745		Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -30.255 AMFE: -0.644 GC content %: 46.980
Ppatens_Pp3c19_6700V3.2 Pp3c19_6700V3.2 PAC:32937825	High	No	854		Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -28.724 AMFE: -0.627 GC content %: 45.785

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).