GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c19_8790 Pp3c19_8790	Chr19	5410996	5411686	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c19_8790V3.1 Pp3c19_8790V3.1 PAC:32938915	High	No	305		Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -25.443 AMFE: -0.562 GC content %: 45.246
Ppatens_Pp3c19_8790V3.2 Pp3c19_8790V3.2 PAC:32938916	High	No	691		Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -28.596 AMFE: -0.576 GC content %: 49.638

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).