Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c1_13080 Pp3c1_13080 |
Chr01 | 9494025 | 9496939 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c1_13080V3.1 Pp3c1_13080V3.1 PAC:32966642 |
High | No | 1886 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -29.862 AMFE: -0.665 GC content %: 44.910 | |
Ppatens_Pp3c1_13080V3.2 Pp3c1_13080V3.2 PAC:32966643 |
High | No | 990 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -27.697 AMFE: -0.616 GC content %: 44.949 | |
Ppatens_Pp3c1_13080V3.3 Pp3c1_13080V3.3 PAC:32966644 |
High | No | 1295 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -26.502 AMFE: -0.655 GC content %: 40.463 |