GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_15040 Pp3c1_15040	Chr01	11312344	11314789	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_15040V3.1 Pp3c1_15040V3.1 PAC:32971320	High	No	1249		Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -28.791 AMFE: -0.646 GC content %: 44.596
Ppatens_Pp3c1_15040V3.3 Pp3c1_15040V3.3 PAC:32971321	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -28.539 AMFE: -0.645 GC content %: 44.255

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).