GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_1740 Pp3c1_1740	Chr01	1176063	1180036	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_1740V3.2 Pp3c1_1740V3.2 PAC:32967832	High	No	3744		Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -28.224 AMFE: -0.631 GC content %: 44.712
Ppatens_Pp3c1_1740V3.3 Pp3c1_1740V3.3 PAC:32967833	High	No	2368		Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -27.741 AMFE: -0.624 GC content %: 44.468

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).