GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_19940 Pp3c1_19940	Chr01	15036746	15039038	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_19940V3.1 Pp3c1_19940V3.1 PAC:32970849	High	No	873		Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -26.117 AMFE: -0.606 GC content %: 43.070
Ppatens_Pp3c1_19940V3.2 Pp3c1_19940V3.2 PAC:32970850	High	No	1783		Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -27.801 AMFE: -0.647 GC content %: 42.961

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).