GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_23990 Pp3c1_23990	Chr01	17695769	17697474	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_23990V3.1 Pp3c1_23990V3.1 PAC:32970770	High	No	1326		Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -29.125 AMFE: -0.619 GC content %: 47.059
Ppatens_Pp3c1_23990V3.2 Pp3c1_23990V3.2 PAC:32970771	High	No	1706		Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -30.117 AMFE: -0.630 GC content %: 47.831

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).