GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_24660 Pp3c1_24660	Chr01	18024270	18026687	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_24660V3.1 Pp3c1_24660V3.1 PAC:32969384	High	No	2152		Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -31.008 AMFE: -0.670 GC content %: 46.283
Ppatens_Pp3c1_24660V3.2 Pp3c1_24660V3.2 PAC:32969385	High	No	2211		Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -30.638 AMFE: -0.675 GC content %: 45.364

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).