GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_25790 Pp3c1_25790	Chr01	18666510	18668338	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_25790V3.1 Pp3c1_25790V3.1 PAC:32968090	High	No	1415		Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -30.629 AMFE: -0.678 GC content %: 45.159
Ppatens_Pp3c1_25790V3.2 Pp3c1_25790V3.2 PAC:32968091	High	No	1042		Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -32.073 AMFE: -0.668 GC content %: 47.985

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).