Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c1_30870 Pp3c1_30870 |
Chr01 | 21871341 | 21873144 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c1_30870V3.1 Pp3c1_30870V3.1 PAC:32969117 |
High | No | 1033 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -29.652 AMFE: -0.605 GC content %: 48.984 | |
Ppatens_Pp3c1_30870V3.2 Pp3c1_30870V3.2 PAC:32969118 |
High | No | 838 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -29.177 AMFE: -0.591 GC content %: 49.403 |