Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c1_34050 Pp3c1_34050 |
Chr01 | 23969796 | 23971232 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c1_34050V3.1 Pp3c1_34050V3.1 PAC:32969171 |
Low | No | 1007 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -27.180 AMFE: -0.603 GC content %: 45.084 | |
Ppatens_Pp3c1_34050V3.2 Pp3c1_34050V3.2 PAC:32969172 |
Low | No | 732 | Get ORF Coding potential... Type: noncoding Potential: -0.229 Folding energies... MFEI: -25.423 AMFE: -0.585 GC content %: 43.443 | |
Ppatens_Pp3c1_34050V3.3 Pp3c1_34050V3.3 PAC:32969173 |
Low | No | 1001 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -27.323 AMFE: -0.605 GC content %: 45.155 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c1_34050V3.1 | SwissProt | 2015-06-01 | Q5ZKH0 | 3.0e-10 |
Ppatens_Pp3c1_34050V3.2 | SwissProt | 2015-06-01 | Q5ZKH0 | 8.0e-11 |
Ppatens_Pp3c1_34050V3.3 | SwissProt | 2015-06-01 | Q5ZKH0 | 3.0e-10 |