GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_38790 Pp3c1_38790	Chr01	26940483	26941325	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_38790V3.1 Pp3c1_38790V3.1 PAC:32970576	High	No	291		Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -29.691 AMFE: -0.572 GC content %: 51.890
Ppatens_Pp3c1_38790V3.2 Pp3c1_38790V3.2 PAC:32970577	High	No	843		Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -27.687 AMFE: -0.657 GC content %: 42.112

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).