Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c1_41290 Pp3c1_41290 |
Chr01 | 28801658 | 28803613 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c1_41290V3.1 Pp3c1_41290V3.1 PAC:32971685 |
Low | No | 996 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -25.171 AMFE: -0.643 GC content %: 39.157 | |
Ppatens_Pp3c1_41290V3.2 Pp3c1_41290V3.2 PAC:32971686 |
Low | No | 1316 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -27.720 AMFE: -0.663 GC content %: 41.793 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c1_41290V3.1 | SwissProt | 2015-06-01 | Q9CAF5 | 2.0e-9 |
Ppatens_Pp3c1_41290V3.2 | SwissProt | 2015-06-01 | Q9CAF5 | 3.0e-9 |