Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c1_4530 Pp3c1_4530 |
Chr01 | 3345745 | 3348312 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c1_4530V3.1 Pp3c1_4530V3.1 PAC:32970125 |
Low | No | 1269 | Get ORF Coding potential... Type: noncoding Potential: -0.030 Folding energies... MFEI: -28.660 AMFE: -0.672 GC content %: 42.632 | |
Ppatens_Pp3c1_4530V3.2 Pp3c1_4530V3.2 PAC:32970126 |
Low | No | 1632 | Get ORF Coding potential... Type: noncoding Potential: -0.080 Folding energies... MFEI: -27.040 AMFE: -0.655 GC content %: 41.299 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c1_4530V3.1 | SwissProt | 2015-06-01 | P17764 | 4.0e-12 |
Ppatens_Pp3c1_4530V3.2 | SwissProt | 2015-06-01 | P17764 | 5.0e-12 |
Ppatens_Pp3c1_4530V3.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA-1N_PPa |