GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_8030 Pp3c1_8030	Chr01	5865453	5867055	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_8030V3.1 Pp3c1_8030V3.1 PAC:32971094	High	No	874		Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -29.474 AMFE: -0.641 GC content %: 45.995
Ppatens_Pp3c1_8030V3.2 Pp3c1_8030V3.2 PAC:32971095	High	No	1358		Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -22.820 AMFE: -0.648 GC content %: 35.199

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).