GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_8250 Pp3c1_8250	Chr01	6041984	6045016	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_8250V3.1 Pp3c1_8250V3.1 PAC:32966607	High	No	2880		Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -29.517 AMFE: -0.664 GC content %: 44.479
Ppatens_Pp3c1_8250V3.2 Pp3c1_8250V3.2 PAC:32966608	High	No	303		Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -34.488 AMFE: -0.630 GC content %: 54.785

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).