Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c20_15220 Pp3c20_15220 |
Chr20 | 10152341 | 10156609 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c20_15220V3.1 Pp3c20_15220V3.1 PAC:32946090 |
High | No | 1950 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -26.118 AMFE: -0.636 GC content %: 41.077 | |
Ppatens_Pp3c20_15220V3.2 Pp3c20_15220V3.2 PAC:32946088 |
Low | Yes | 1860 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -28.527 AMFE: -0.653 GC content %: 43.656 | |
Ppatens_Pp3c20_15220V3.3 Pp3c20_15220V3.3 PAC:32946089 |
High | No | 312 | Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -28.782 AMFE: -0.565 GC content %: 50.962 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c20_15220V3.2 | Rfam | 11.0 | MIR535 | 7.8e-15 |