GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c20_23220 Pp3c20_23220	Chr20	15068395	15070352	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c20_23220V3.1 Pp3c20_23220V3.1 PAC:32947669	High	No	1032		Get ORF Coding potential... Type: noncoding Potential: -1.318 Folding energies... MFEI: -24.128 AMFE: -0.571 GC content %: 42.248
Ppatens_Pp3c20_23220V3.2 Pp3c20_23220V3.2 PAC:32947670	High	No	1599		Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -25.572 AMFE: -0.609 GC content %: 41.964
Ppatens_Pp3c20_23220V3.3 Pp3c20_23220V3.3 PAC:32947671	High	No	761		Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -26.505 AMFE: -0.573 GC content %: 46.255

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).