GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c20_2480 Pp3c20_2480	Chr20	1352303	1353081	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c20_2480V3.1 Pp3c20_2480V3.1 PAC:32945787	High	No	351		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -27.379 AMFE: -0.565 GC content %: 48.433
Ppatens_Pp3c20_2480V3.2 Pp3c20_2480V3.2 PAC:32945788	High	No	288		Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -25.799 AMFE: -0.527 GC content %: 48.958

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).