GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c20_8420 Pp3c20_8420	Chr20	5132942	5134039	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c20_8420V3.1 Pp3c20_8420V3.1 PAC:32947286	High	No	225		Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -26.578 AMFE: -0.575 GC content %: 46.222
Ppatens_Pp3c20_8420V3.2 Pp3c20_8420V3.2 PAC:32947287	High	No	1098		Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -28.106 AMFE: -0.646 GC content %: 43.534

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).