GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c20_8800 Pp3c20_8800	Chr20	5323306	5324089	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c20_8800V3.1 Pp3c20_8800V3.1 PAC:32946605	High	No	324		Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -20.957 AMFE: -0.407 GC content %: 51.543
Ppatens_Pp3c20_8800V3.2 Pp3c20_8800V3.2 PAC:32946606	High	No	784		Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -24.732 AMFE: -0.539 GC content %: 45.918

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).